PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052705.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 561aa    MW: 60645 Da    PI: 6.0089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052705.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.6e-11377419754
                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
           HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  EcC052705.10 377 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 419
                   79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682370419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-16373441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14376425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-9376419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.14E-13377423No hitNo description
Gene3DG3DSA:4.10.280.101.7E-15377432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048736.25E-7490550No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MVLGPSGVAW MDNVGEEDEV SWTRDAAAAA AAHHHDGGGG GNDDEAARHK EDELAMAGAS  60
LPTFKSMLDA DWSYFATNPP HHSHQQQQQQ QQLQQQLQPA PEMADLSFSS AAPIPDNALL  120
LHHSHHQHPL DSSSSCSPSQ AFVLDPSQTH QPFLQPKHCF SSLLNVAWNN SFDNGFDLGC  180
DAAGLFGSVQ GNQTSSAPLL MGGSELGSGS ELLPVPSRLV PLGENSTQLP GGGFGLTGFE  240
GFESPGNPLF TNRSTKVLRP LEVFPQTGAQ PTLFQKRAAL RNGSGSNGGG AEKLGNLEIS  300
VSRFGELDKK RKKIDDGIND ELSFDGSGLN YDTDEGNESG KAMEDSKHEG CNSNANSTVT  360
VGDQKGKKKG LPAKNLMAER RRRKKLNDRL YMLRSVVPKI SKMDRASILG DAIDYLKELL  420
QRINDLHNEL ESTPPGSMLP PSTNFHPLTP TPPTLPCRVK EELCPSSLPS PKGQPARVEV  480
RVREGRAVNI HMFCARRPGL LLSTMRALDN LGLDIQQAVI SCFNAFAMDI FRAEQCREGQ  540
DVLPEQIKAL LLESAGFHGM V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308312KKRKK
2366384KKKGLPAKNLMAERRRRKK
3378385ERRRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066419.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-162ICE1_ARATH; Transcription factor ICE1
TrEMBLF6K5V10.0F6K5V1_EUCGL; ICE transcription factor 1
STRINGVIT_14s0068g01200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19522782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-130bHLH family protein